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Pond & Dugout Algae Treatment There are two main types of algae and they both must be treated very differently if they are already present. They both are treated with ProClear Algaecide. This product works by being absorbed by the algae which then kills it. However, while both types are treated with ProClear, thy are treated with different rates and different methods.  Filamentous algae is non-toxic, but is a cosmetic inconvenience that decreases water quality. It creates a thi …